Methods for Measuring Semantic Similarity of Texts

A thesis submitted in partial ful lment of the requirements of the University of Wolverhampton for the degree of Doctor of PhilosophyMeasuring semantic similarity is a task needed in many Natural Language Processing (NLP) applications. For example, in Machine Translation evaluation, semantic similarity is used to assess the quality of the machine translation output by measuring the degree of equivalence between a reference translation and the machine translation output. The problem of semantic similarity (Corley and Mihalcea, 2005) is de ned as measuring and recognising semantic relations between two texts. Semantic similarity covers di erent types of semantic relations, mainly bidirectional and directional. This thesis proposes new methods to address the limitations of existing work on both types of semantic relations. Recognising Textual Entailment (RTE) is a directional relation where a text T entails the hypothesis H (entailment pair) if the meaning of H can be inferred from the meaning of T (Dagan and Glickman, 2005; Dagan et al., 2013). Most of the RTE methods rely on machine learning algorithms. de Marne e et al. (2006) propose a multi-stage architecture where a rst stage determines an alignment between the T-H pairs to be followed by an entailment decision stage. A limitation of such approaches is that instead of recognising a non-entailment, an alignment that ts an optimisation criterion will be returned, but the alignment by itself is a poor predictor for iii non-entailment. We propose an RTE method following a multi-stage architecture, where both stages are based on semantic representations. Furthermore, instead of using simple similarity metrics to predict the entailment decision, we use a Markov Logic Network (MLN). The MLN is based on rich relational features extracted from the output of the predicate-argument alignment structures between T-H pairs. This MLN learns to reward pairs with similar predicates and similar arguments, and penalise pairs otherwise. The proposed methods show promising results. A source of errors was found to be the alignment step, which has low coverage. However, we show that when an alignment is found, the relational features improve the nal entailment decision. The task of Semantic Textual Similarity (STS) (Agirre et al., 2012) is de- ned as measuring the degree of bidirectional semantic equivalence between a pair of texts. The STS evaluation campaigns use datasets that consist of pairs of texts from NLP tasks such as Paraphrasing and Machine Translation evaluation. Methods for STS are commonly based on computing similarity metrics between the pair of sentences, where the similarity scores are used as features to train regression algorithms. Existing methods for STS achieve high performances over certain tasks, but poor results over others, particularly on unknown (surprise) tasks. Our solution to alleviate this unbalanced performances is to model STS in the context of Multi-task Learning using Gaussian Processes (MTL-GP) ( Alvarez et al., 2012) and state-of-the-art iv STS features ( Sari c et al., 2012). We show that the MTL-GP outperforms previous work on the same datasets

Recurrent Infections by Staphylococcus Aureus in Patients with Nasal Piercing Associated to the State of the Carrier. Study of Case

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Con larvas de moscas sanan heridas crónicas

Diminutas, blancas, silenciosas, similares a los ‘gusanos’ que se encuentran en una guayaba, son las larvas esterilizadas de una mosca verde conocida científicamente como Lucilia sericata, capaces de sanar las heridas de una vaca y varios conejos. Así lo pudieron constatar los miembros del grupo de investigación en terapia larval de la Facultad de Medicina de la Universidad del Rosario, dirigidos por el profesor Felio Bello, biólogo y Ph.D en Entomología. Aunque las investigaciones, experimentos, mediciones y cura no se están aplicando en Colombia en humanos en esta primera fase del proyecto, la terapia larval, conocida en el mundo como terapia de gusano, terapia de desbridamiento larval o biocirugía, sí es una esperanza de cura para personas diabéticas, por ejemplo, que sufren de úlceras crónicas en la piel cuando sus heridas no responden a tratamientos convencionales.(1) La terapia larval, como alternativa de tratamiento para estas heridas que no cicatrizan, es un método más económico, de evolución más rápida y seguro. (1) Stoddard et al.1995, Mumcuoglu et al. 1998, 1999, Thomas et al. 1999, Tantawi et al. 2007

Variability of Staphylococcus Aureus Carriers on a Medicine Student’s Population

Para evaluar en estudiantes de medicina la variación del estado de portador de Staphylococcus aureus y su resistencia antimicrobiana, antes y después de la práctica clínica, se realizó un estudio longitudinal en una cohorte de 159 estudiantes de cuarto y noveno semestre universitario. Se tomaron muestras de las zonas periamigdalianas y/o pared posterior de orofaringe, de las fosas nasales y las manos, se cultivaron en agar sangre de cordero al 5% y se incubaron en aerobiosis a 37°C, durante 48 horas. La identificación de Staphylococcus aureus se realizó según las características macroscópicas y pruebas bioquímicas. La susceptibilidad a los antimicrobianos se evaluó mediante el método de difusión de disco, por la técnica de Kirby-Bauer, siguiendo las normas internacionales del Clinical and Laboratory Standards Institute (CLSI), con los siguientes antimicrobianos: ciprofloxacina, vancomicina, oxacilina, cefalotina,clindamicina y rifampicina. La edad promedio de los alumnos de cuarto semestre fue 19,1±1,2 años y el género femenino fue 2/1 más frecuente que el masculino. Se analizaron la presencia de antecedentes como: infecciones, alergias, estado de fumador, otras patologías no infecciosas, uso de antibióticos en los últimos tres meses y procedimientos quirúrgicos u hospitalizaciones seis meses previos a la toma de las muestras. No hubo relación significativa entre la incidencia del estado de portador y los antecedentes estudiados. Se observó un aumento significativo del 15,1%, con respecto al grupo de estudiantes de cuarto semestre, en el estado de portador de S. aureus en el grupo de estudiantes de noveno semestre, después de haber estado expuestos durante tres años al ambiente hospitalario, (p=0,001 Test exacto de Mc Nemar). De los portadores, el 16,4% presentó la bacteria en manos (p<0,001), el 13,8% en fosas nasales (p=0,0015) y el 3,2% en faringe. Por otra parte,el 35,8% de los portadores presentó persistencia, de los cuales el 25,2% fue en fosas nasales; el 4,4%, en faringe y el 3,8% en manos. En cuanto a la resistencia a los antimicrobianos, el 1,9% de las cepas aisladas de los estudiantes de cuarto semestre presentó resistencia: una a ciprofloxacina y dos a clindamicina (tres estudiantes). Por su parte, el 2,5% de las cepas aisladas de estudiantes de noveno semestre fue resistente: una a cefalotina, ciprofloxacina, oxacilina y clindamicina, una a cefalotina y oxacilina y dos a clindamicina (cuatro estudiantes). En el 1,3% del grupo estudiado se aislaron cepas de Staphylococcus aureus Resistentes a la Meticilina (MRSA, por sus siglas en inglés). Estos resultados no muestran diferencias significativas (p=1.000). This is a longitudinal study performed in a 159 medicine student’s cohort, of fourth and ninth study semester, in order to evaluate the variation of Staphylococcus aureus carriers and its antimicrobial susceptibility on students, before and after clinical practice. Clinical samples were taken with a swab from the tonsils, pharynx posterior wall, nasal fosses and hands and were cultured in 5% sheep blood and incubated at 37oC in aerobic conditions during 48 hours. The identification of Sthaphylococcus aureus was performed according to the phenotypic and biochemical test. The antimicrobial susceptibility was evaluated by the diffusion disc method using the Kirby-Bauer technique, according to Clinical and Laboratory Standards Institute (CLSI), with the following antibiotics: Ciprofloxacyn, Vancomycin, Oxacyclin, Cephalotine, Clyndamycin, and Ryphampycin. The average age of the fourth semester students was 19.1± 1,2 years and the female gender was 2/1 more frequent than the male. The history of infections, allergy, smoke habit, non infectious diseases, surgeries, antibiotic use during the last three months and hospitalizations six months before sampling was analyzed. There was no significant relationship between previous history analysis and the carrier state incidence (p=0.001 Mc Nemar exact Test). A significant increase of 15,1% for S. aureus carrier state was observed after three years of exposure to hospital environment on ninth semester students, compared to fourth semester students (p=0.001 Test Mc Nemar); from which 16.4% (p<0.001) was founded in hands, 13.8% in nasal fosses (p=0.0015) and 3.2% in pharynx. 35.8% of S. aureus carrier was persistent: 25.2% in nasal fosses, 4.4% in pharynx and 3.8% in hands. Antimicrobial resistance was observed in 1.9% of the bacterial strains isolated from fourth semester students: One to Ciprofloxacyn and two to Clyndamycin. Besides was observed 2.5% of bacterial strains isolated from ninth semester students: one to Ciprofloxacyn, Oxacyclin, Cephalotine and Clyndamycin, one to Cephalotine and Oxacyclin and two to Clyndamycin. Finally, Methycylin Resistant Sthaphylococcus Aureus (MRSA) strains were isolated from 1.3% of the studied group. This results didn’t show significant differences b(p=1.000)

Infecciones recurrentes en paciente con piercing nasal

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Active Front-End converter applied for the THD reduction in power systems

The Active Front-End (AFE) converter topology is generated by modifying a conventional back-to-back converter, from using a single VSC to use pVCS connected in parallel. The AFE configuration improves the capability, efficiency and reliability of energy conversion devices connected to the power system. In this paper, a novel technique to reduce the total harmonic distortion (THD) in an AFE converter topology is proposed and analyzed. The THD reduction is achieved by applying a phase shift angle in the SPWM switching signals of each AFE converter VSC. To verify the functionality and robustness of the proposed methodology, the power system simulation in Matlab-Simulink is analyzed for a type-4 wind turbine converter with total power output of 9MW. The obtained simulation results show a THD reduction up to 2.5 for AFE connected to the power network

Evaluación de la terapia larval en el proceso de curación de heridas infectadas con Pseudomonas aeruginosa en conejos

Introduction. During the last two decades the larval therapy has reemerged as a safe and reliable alternative for the healing of cutaneous ulcers that do not respond to the conventional treatments. Objective. To evaluate the use of the larvae of Lucilia sericata as a treatment for infected wounds with Pseudomonas aeruginosa in an animal model. Materials and methods. Twelve rabbits were randomly distributed in 3 groups: the first group was treated with larval therapy; the second was treated with antibiotics therapy and to the third no treatment was applied, therefore was established as a control group. To each animal a wound was artificially induced, and then a suspension of P. aeruginosa was inoculated into the lesion. Finally, every rabbit was evaluated until the infection development was recognized and treatment was set up for the first two groups according with the protocols mentioned above. Macroscopic evaluation of the wounds was based on the presence of edema, exudates, bad odor, inflammation around the wound and the presence of granulation tissue. The healing process was evaluated by monitoring histological changes in the dermal tissue. Results. Differences in the time required for wound healing were observed between the first group treated with larval therapy (10 days) and the second group treated with conventional antibiotics therapy (20 days). Conclusion. The L. sericata larva is and efficient tool as a therapy for infected wounds with P. aeruginosa.Introducción. Durante las últimas dos décadas,la terapia larval ha resurgido como una alternativa confiable y segura para la cura de úlceras cutáneas que no responden a los tratamientos convencionales. Objetivo. Evaluar el uso de las larvas de Lucilia sericata en el tratamiento de heridas infectadas con Pseudomonas aeruginosa en un modelo animal. Materiales y métodos. Se tomaron 12 conejos, los cuales fueron divididos al azar en 3 grupos homogéneos: al primero se le aplicó terapia larval, el segundo se trató con terapia antibiótica y el tercero fue establecido como control. A cada uno de los animales se les realizó una herida, luego se inoculó en ésta una suspensión de P. aeruginosa y, finalmente, al registrarse el desarrollo de la infección, se procedió, en los dos primeros grupos, a los tratamientos correspondientes. Para la evaluación macroscópica de las heridas, se tuvo en cuenta la presencia de edema y exudado, mal olor, inflamación alrededor de la herida y apariencia Bdel tejido de granulación. Al proceso de cicatrización se le hizo seguimiento a través de una técnica dermohistológica.Resultados. Se registraron claras diferencias entre el grupo de animales tratados con terapia larval vs. el grupo tratado con terapia convencional de antibióticos, estableciéndose un periodo de 10 días para alcanzar la cicatrización en el grupo de terapia larval mientras que en el segundo grupo el proceso se cumplió en 20 días. Conclusiones. Se demostró la eficacia de las larvas de L. sericata en el tratamiento de heridas infectadas con P. aeruginosa

Why Are Outcomes Different for Registry Patients Enrolled Prospectively and Retrospectively? Insights from the Global Anticoagulant Registry in the FIELD-Atrial Fibrillation (GARFIELD-AF).

Background: Retrospective and prospective observational studies are designed to reflect real-world evidence on clinical practice, but can yield conflicting results. The GARFIELD-AF Registry includes both methods of enrolment and allows analysis of differences in patient characteristics and outcomes that may result. Methods and Results: Patients with atrial fibrillation (AF) and ≥1 risk factor for stroke at diagnosis of AF were recruited either retrospectively (n = 5069) or prospectively (n = 5501) from 19 countries and then followed prospectively. The retrospectively enrolled cohort comprised patients with established AF (for a least 6, and up to 24 months before enrolment), who were identified retrospectively (and baseline and partial follow-up data were collected from the emedical records) and then followed prospectively between 0-18 months (such that the total time of follow-up was 24 months; data collection Dec-2009 and Oct-2010). In the prospectively enrolled cohort, patients with newly diagnosed AF (≤6 weeks after diagnosis) were recruited between Mar-2010 and Oct-2011 and were followed for 24 months after enrolment. Differences between the cohorts were observed in clinical characteristics, including type of AF, stroke prevention strategies, and event rates. More patients in the retrospectively identified cohort received vitamin K antagonists (62.1% vs. 53.2%) and fewer received non-vitamin K oral anticoagulants (1.8% vs . 4.2%). All-cause mortality rates per 100 person-years during the prospective follow-up (starting the first study visit up to 1 year) were significantly lower in the retrospective than prospectively identified cohort (3.04 [95% CI 2.51 to 3.67] vs . 4.05 [95% CI 3.53 to 4.63]; p = 0.016). Conclusions: Interpretations of data from registries that aim to evaluate the characteristics and outcomes of patients with AF must take account of differences in registry design and the impact of recall bias and survivorship bias that is incurred with retrospective enrolment. Clinical Trial Registration: - URL: http://www.clinicaltrials.gov . Unique identifier for GARFIELD-AF (NCT01090362)

Risk profiles and one-year outcomes of patients with newly diagnosed atrial fibrillation in India: Insights from the GARFIELD-AF Registry.

BACKGROUND: The Global Anticoagulant Registry in the FIELD-Atrial Fibrillation (GARFIELD-AF) is an ongoing prospective noninterventional registry, which is providing important information on the baseline characteristics, treatment patterns, and 1-year outcomes in patients with newly diagnosed non-valvular atrial fibrillation (NVAF). This report describes data from Indian patients recruited in this registry. METHODS AND RESULTS: A total of 52,014 patients with newly diagnosed AF were enrolled globally; of these, 1388 patients were recruited from 26 sites within India (2012-2016). In India, the mean age was 65.8 years at diagnosis of NVAF. Hypertension was the most prevalent risk factor for AF, present in 68.5% of patients from India and in 76.3% of patients globally (P < 0.001). Diabetes and coronary artery disease (CAD) were prevalent in 36.2% and 28.1% of patients as compared with global prevalence of 22.2% and 21.6%, respectively (P < 0.001 for both). Antiplatelet therapy was the most common antithrombotic treatment in India. With increasing stroke risk, however, patients were more likely to receive oral anticoagulant therapy [mainly vitamin K antagonist (VKA)], but average international normalized ratio (INR) was lower among Indian patients [median INR value 1.6 (interquartile range {IQR}: 1.3-2.3) versus 2.3 (IQR 1.8-2.8) (P < 0.001)]. Compared with other countries, patients from India had markedly higher rates of all-cause mortality [7.68 per 100 person-years (95% confidence interval 6.32-9.35) vs 4.34 (4.16-4.53), P < 0.0001], while rates of stroke/systemic embolism and major bleeding were lower after 1 year of follow-up. CONCLUSION: Compared to previously published registries from India, the GARFIELD-AF registry describes clinical profiles and outcomes in Indian patients with AF of a different etiology. The registry data show that compared to the rest of the world, Indian AF patients are younger in age and have more diabetes and CAD. Patients with a higher stroke risk are more likely to receive anticoagulation therapy with VKA but are underdosed compared with the global average in the GARFIELD-AF. CLINICAL TRIAL REGISTRATION-URL: http://www.clinicaltrials.gov. Unique identifier: NCT01090362

Crowdsourcing Methods for Data Collection in Geophysics: State of the Art, Issues, and Future Directions

Data are essential in all areas of geophysics. They are used to better understand and manage systems, either directly or via models. Given the complexity and spatiotemporal variability of geophysical systems (e.g., precipitation), a lack of sufficient data is a perennial problem, which is exacerbated by various drivers, such as climate change and urbanization. In recent years, crowdsourcing has become increasingly prominent as a means of supplementing data obtained from more traditional sources, particularly due to its relatively low implementation cost and ability to increase the spatial and/or temporal resolution of data significantly. Given the proliferation of different crowdsourcing methods in geophysics and the promise they have shown, it is timely to assess the state‐of‐the‐art in this field, to identify potential issues and map out a way forward. In this paper, crowdsourcing‐based data acquisition methods that have been used in seven domains of geophysics, including weather, precipitation, air pollution, geography, ecology, surface water and natural hazard management are discussed based on a review of 162 papers. In addition, a novel framework for categorizing these methods is introduced and applied to the methods used in the seven domains of geophysics considered in this review. This paper also features a review of 93 papers dealing with issues that are common to data acquisition methods in different domains of geophysics, including the management of crowdsourcing projects, data quality, data processing and data privacy. In each of these areas, the current status is discussed and challenges and future directions are outlined